PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000225886
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 273aa    MW: 31761.5 Da    PI: 8.7947
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000225886genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00025107130123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    ++C++C+ksF+  + L +H  + H
  MDP0000225886 107 WQCGYCKKSFRAEMFLDQHFDNrH 130
                    58***********99999976655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280109130IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MKKTNLFVSI LLFLSFSVLQ VSSLTQTNQD FEKSESSRTL EQGQEHAHEV HCSRERSRAA  60
WQIIEKYLMP FVEHEHYEIP SNCRLHPDND LFRDQEEHKI HLDINEWQCG YCKKSFRAEM  120
FLDQHFDNRH YNLLNVSGSK CLADLCGALH CDAVMNTKLS KTKCNPASVA RNHHLCEGLA  180
NSCFPINQSP SARRLNEFFL HQFCHAHTCS GKRKLFPRGG KKHISVFYLA ISILTLMLLP  240
IFYLIVYLHQ REMRKGTQEL RRISKVGQKT KPS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.220460.0fruit| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008361020.10.0PREDICTED: uncharacterized protein LOC103424702
TrEMBLB9IF521e-145B9IF52_POPTR; Zinc finger family protein
STRINGPOPTR_0015s10200.11e-144(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32161319
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.11e-124C2H2-like zinc finger protein